DNA analyses brochure Back to DNA analyses
Ginekaliks Genomics Center

DNA analyses. From one gene to the whole genome.

Seven analyses that read DNA at different depths, sequenced and interpreted in our own laboratory in Skopje. This brochure explains what each one reads, who it is for, and what the report will tell you.

7Analyses, from a targeted panel to the genome
In-houseSequenced and read in Skopje
GeneticistCounselling before, a signed report after
2026Edition. Panels and prices confirmed on request

Stevo Crvenkovski 32-1, units 2 and 3, Skopje  ·  +389 2 203 0424  ·  [email protected]  ·  Monday to Friday, 08:00 to 16:00

01 — The laboratory

Every sample stays in Skopje

DNA is extracted, sequenced and analysed in our own laboratory. Nothing is shipped to a reference laboratory abroad, which removes transit and handling from the process, keeps your data in the country, and means the geneticist who explains the result has access to the run that produced it.

Counselling firstEvery analysis begins with a conversation about what the test can and cannot answer.
Clinical gradeValidated pipelines, variants classified to international (ACMG) criteria.
A signed reportRead and signed by a clinical geneticist, written to be understood.
Follow-upImplications for relatives, and the next test if one is needed.

Accreditation and certificate numbers are listed in the laboratory's legal documentation and confirmed on request.

02 — Overview

The seven analyses

They differ in one thing above all: how much of the genome they read. Wider is not automatically better. A wider test takes longer, costs more and returns more variants of uncertain meaning, so the depth is matched to the question.

CARRIERCarrier screeningWhat you and your partner could pass on, before or during pregnancy.
CNVCNV analysisMissing or repeated pieces of chromosome, far below what a microscope sees.
cWESClinical exomeThe coding part of all 20,000 genes in one test.
cWGSClinical genomeAll 3 billion letters, coding and non-coding.
PANELGene panelsA defined list of genes for a clear clinical question.
KARYOKaryotypeAll 46 chromosomes, counted and seen under the microscope.
NBSNewborn screeningTreatable conditions, from a heel prick in the first days.
NEXTNot sure?The following slide maps common situations to the analysis that answers them.
03 — Choosing

Start from the question, not the technology

SituationStart withAlso consider
Planning a pregnancy, or early in oneCarrier screening, both partnersPGT-M through IVF if both are carriers
A child with developmental delay, autism or unexplained symptomscWES, ideally with both parentsCNV analysis first; cWGS if the exome is negative
A known condition in the family, or a clear clinical pictureGene panel for that conditioncWES if the panel is negative
Recurrent miscarriage, infertility, or a suspected chromosome conditionKaryotypeCNV analysis for smaller changes
A structural finding on ultrasound or karyotypeCNV analysiscWGS to map the breakpoints
A newborn, in the first days of lifeNewborn screeningConfirmatory testing if a result is positive

A guide, not a prescription. Several of these are ordered by the treating doctor; all of them start with a conversation with a geneticist.

04 — Carrier screening

Find out what you could pass on, before it matters

Most of us carry a few recessive variants without ever knowing. Nothing happens unless both partners carry a variant in the same gene, and then each pregnancy has a one in four chance of the condition. Carrier screening reads a set of those genes in both partners.

What it readsA panel of genes for recessive conditions: cystic fibrosis, spinal muscular atrophy, thalassaemia and many rarer ones.
WhoBoth partners, or one first and the other if a variant is found.
SampleBlood or saliva.
ReportCarrier status per gene, the couple's combined risk, and residual risk where no variant is found.

Best done before pregnancy, when the options are widest. If both partners carry the same condition, a geneticist explains the choices, from embryo testing through IVF (PGT-M) to prenatal diagnosis.

05 — CNV analysis

Missing or extra pieces too small for a microscope

Copy-number variants are stretches of DNA that are deleted or duplicated. Many are harmless; some cause developmental delay, autism, epilepsy or congenital anomalies. A chromosomal microarray finds changes far below what a karyotype can see, down to tens of thousands of letters.

What it readsGains and losses across all chromosomes at high resolution. Not single-letter changes; that is what sequencing is for.
WhoChildren with delay, autism or anomalies; prenatal samples after an ultrasound finding.
SampleBlood; amniotic fluid or chorionic villi for prenatal cases.
ReportEach variant classified as pathogenic, likely pathogenic or of uncertain significance.

Copy-number changes explain roughly one in ten cases of developmental delay or autism, which is why this is often the first genetic test ordered for a child.

06 — cWES

All 20,000 genes, read to clinical standard

The exome is the 1 to 2% of the genome that codes for proteins, and it holds around 85% of the variants known to cause disease. Sequencing it reads every gene at once, which is why it is the test of choice when the symptoms do not point to one gene.

What it readsThe coding regions of all protein-coding genes, plus the adjacent bases where most splicing variants sit.
WhoSuspected genetic disease without a clear candidate gene; a negative panel; complex or overlapping symptoms.
SampleBlood or saliva from the patient, and ideally from both parents.
ReportFindings related to the reason for testing, classified and explained. Secondary findings only if you opt in.

The "c" is clinical: an accredited laboratory, a validated pipeline, ACMG classification and a geneticist's signature, so the result can be used for care. Published diagnostic yield is roughly one in three to one in four; testing the child together with both parents raises it and cuts uncertain findings.

07 — cWGS

The whole genome, including what the exome leaves out

Whole genome sequencing reads all 3 billion letters: the genes, the regulatory regions between them, and the structure of the chromosomes. It sees deep intronic and non-coding variants, finds copy-number and structural changes more reliably, and covers genes the exome captures poorly.

What it readsEvery chromosome end to end, coding and non-coding, at uniform coverage.
WhoExome-negative cases with a strong clinical suspicion; suspected structural or non-coding causes.
SampleBlood, from the patient and ideally both parents.
ReportAs for cWES, with structural and copy-number findings included.

Same clinical-grade standards as cWES. Turnaround is longer and the data much larger, so it is chosen deliberately rather than by default.

08 — Gene panels

A focused set of genes for a clear question

When the clinical picture points to a group of conditions, a panel reads exactly the genes known to cause them: cardiomyopathies, hereditary cancer, epilepsies, hearing loss, connective-tissue disorders and many others. Fewer genes means a faster answer and fewer uncertain findings.

What it readsA defined list of genes, from a handful to several hundred, sequenced in full.
WhoA known condition in the family, or symptoms that fit a recognised group of disorders.
SampleBlood or saliva.
ReportVariants in the panel genes, classified and explained, with the implications for relatives.

If the family's variant is already known, a targeted test for that single variant is enough for relatives. If a panel is negative and suspicion remains, the same sample can move on to the exome.

09 — Karyotype

All 46 chromosomes, seen under the microscope

The oldest genetic test and still the right one for some questions. Cells are grown, stopped mid-division, stained and photographed, and the chromosomes are arranged in pairs. The picture shows their number and their large-scale structure.

It detects extra or missing chromosomes such as trisomy 21, Turner and Klinefelter syndrome, and large rearrangements such as balanced translocations, a common hidden cause of recurrent miscarriage. Changes smaller than a few million letters need CNV analysis instead.

A karyogram: the 22 pairs of autosomes and the X and Y chromosomes of a human male, arranged by size
A normal male karyotype, 46,XY. Image: National Human Genome Research Institute, public domain.
10 — Newborn screening

A few drops of blood in the first days, for conditions that can be treated

Some inherited conditions show no signs at birth but cause lasting harm if treatment starts late, and are manageable if it starts early. Newborn screening looks for exactly those, from a heel-prick blood spot taken in the first days of life.

What it readsMetabolic and genetic markers for treatable childhood conditions; the expanded version sequences the responsible genes.
WhoEvery newborn, ideally within the first week.
SampleA heel-prick blood spot on a filter card.
ReportScreen negative, or screen positive with the confirmatory test and the specialist to see.

A screen-positive result is not a diagnosis. It is always confirmed with a specific test before any decision, and a geneticist explains either outcome.

11 — Talk to us

Not sure which one? That is what the first conversation is for.

Call and describe the situation. A geneticist will say which analysis answers it, what sample is needed and how long it takes.

LaboratoryStevo Crvenkovski 32-1, units 2 and 3, Skopje
Phone+389 2 203 0424
HoursMonday to Friday, 08:00 to 16:00

Descriptions in this brochure are general and educational. Gene lists, resolution, turnaround, prices and accreditation details are confirmed by the laboratory. Genetic testing is done with informed consent and, for children, the consent of both parents or guardians. Results are interpreted in the context of the person's history and are not a substitute for medical care.

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